STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VTY5Os03g0185500 protein. (526 aa)    
Predicted Functional Partners:
Q10CV7_ORYSJ
Narf, putative, expressed; Belongs to the NARF family.
      
 0.499
Q0JL19_ORYSJ
Os01g0631200 protein; Belongs to the precorrin methyltransferase family.
   
  
 0.493
Q0E4G5_ORYSJ
Os02g0120400 protein.
      
 0.422
A0A0P0Y7A6
Os12g0164800 protein.
  
  
 0.409
A0A0P0X6F8
Os07g0485400 protein.
   
  
 0.404
Q2QSX5_ORYSJ
tRNA synthetases class II family protein, expressed.
   
  
 0.404
Q93WM3_ORYSJ
Os01g0372700 protein.
   
  
 0.404
A0A0P0W4W0
Os03g0800900 protein.
      
 0.403
OJ1234_B11.18
Succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of ATP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit.
      
 0.403
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.