Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0VVB4Os03g0243200 protein. (192 aa)    
Predicted Functional Partners:
A0A0P0VWT0
Os03g0281800 protein.
   
 0.992
B1153E06.24
Zinc finger CCCH domain-containing protein 45.
    
 0.992
Q6ERD4_ORYSJ
Os09g0397900 protein.
   
 0.990
A0A0P0XZG5
Os11g0171400 protein.
    
 0.989
A0A0P0UXE6
Os01g0103700 protein.
   
 0.979
B7EZ59_ORYSJ
cDNA clone:002-100-D10, full insert sequence.
   
 0.979
Q2QX64_ORYSJ
cDNA clone:J023025N02, full insert sequence.
   
 0.922
Q6ZGM1_ORYSJ
cDNA clone:J023131N03, full insert sequence.
    
  0.903
Q6ZA50_ORYSJ
cDNA clone:J013053F13, full insert sequence.
    
 0.894
Q8LHK9_ORYSJ
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.888
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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