Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A0P0VWD5Os03g0297900 protein. (646 aa)    
Predicted Functional Partners:
Q5ZAV6_ORYSJ
cDNA, clone: J053063D20, full insert sequence.
     
 0.553
A0A0P0WS15
Os06g0111600 protein.
     
 0.543
PETE
Plastocyanin, chloroplastic; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I.
   
 0.518
prx3
Peroxidase; Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress.
   
 0.517
SLY1
SEC1 family transport protein SLY1; May be involved in the early secretory pathway.
     
 0.503
OsJ_17006
Solute carrier family 40 member 3, chloroplastic; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
    
 0.490
S40A2_ORYSJ
Solute carrier family 40 member 2, chloroplastic; May be involved in iron transport and iron homeostasis.
    
 0.490
P0528E12.13
Solute carrier family 40 member 1; May be involved in iron transport and iron homeostasis. Belongs to the ferroportin (FP) (TC 2.A.100) family. SLC40A subfamily.
    
 0.490
Q0JBC2_ORYSJ
cDNA clone:J013155A07, full insert sequence.
      
 0.476
A0A0P0VV33
Os03g0235000 protein; Belongs to the peroxidase family.
   
 0.469
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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