Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0W203Os03g0686100 protein. (60 aa)    
Predicted Functional Partners:
Q0DY92_ORYSJ
Os02g0708300 protein.
    
 0.522
Q0JRD5_ORYSJ
cDNA clone:001-025-F02, full insert sequence.
    
 0.522
Q0DY89_ORYSJ
Os02g0708600 protein.
   
  0.505
Q0DY90_ORYSJ
cDNA clone:002-114-G07, full insert sequence.
   
  0.505
A0A0P0VPL8
Os02g0745900 protein.
   
 0.494
Q6YWY5_ORYSJ
cDNA clone:J023079J03, full insert sequence; Belongs to the cullin family.
   
 0.494
Q5QMP6_ORYSJ
Os01g0673500 protein.
   
  0.439
Q7XXR9_ORYSJ
Os01g0757400 protein.
   
  0.439
KATNA1
Katanin p60 ATPase-containing subunit A1; Severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
   
  0.439
A0A0P0V765
Os01g0706200 protein; Belongs to the cullin family.
   
  0.426
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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