Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0W362Os03g0716900 protein. (108 aa)    
Predicted Functional Partners:
Q10DW5_ORYSJ
Cytochrome b561 family protein, expressed.
      
 0.618
Q10DW3_ORYSJ
Splicing factor 3A subunit 3, putative, expressed.
      
 0.560
A0A0N7KHY1
Os03g0716400 protein.
      
 0.548
Q0DP45_ORYSJ
Os03g0717000 protein.
      
 0.514
Q9FVY1_ORYSJ
Cytochrome b561 family protein, expressed.
      
 0.483
A0A0P0W490
Os03g0802600 protein; Belongs to the AAA ATPase family.
      
 0.471
A0A0P0W4E5
Os03g0802050 protein.
      
 0.471
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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