Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0W396Os03g0737200 protein. (187 aa)    
Predicted Functional Partners:
A0A0P0VEQ4
Os02g0142500 protein.
    
 
 0.937
A0A0P0VES3
Os02g0142950 protein.
    
 
 0.937
Q2R3F6_ORYSJ
Helix-loop-helix DNA-binding domain containing protein, expressed.
    
 
 0.937
Q5JK17_ORYSJ
cDNA clone:J033098G23, full insert sequence.
    
 
 0.937
Q10R44_ORYSJ
Nucleoporin family protein, putative, expressed.
    
 
 0.914
Q5ZBF5_ORYSJ
cDNA clone:J023044A10, full insert sequence; Belongs to the WD repeat SEC13 family.
    
 
 0.913
Q6YTK1_ORYSJ
Os08g0266600 protein.
    
 
 0.913
Q8LIZ0_ORYSJ
Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC).
    
 
 0.913
A0A0P0Y588
Os11g0643700 protein.
    
 
 0.912
Q10PQ6_ORYSJ
Nup133 nucleoporin family protein, expressed.
    
 
 0.905
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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