Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0W752Os04g0137001 protein. (72 aa)    
Predicted Functional Partners:
B7EU45_ORYSJ
cDNA clone:J033118O22, full insert sequence.
     
 0.943
A0A0P0UYP2
Os01g0172900 protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.942
A0A0P0VBN2
Os01g0891100 protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.942
B9GA71_ORYSJ
Os11g0249400 protein.
     
 0.939
Q10PY4_ORYSJ
cDNA clone:001-127-F09, full insert sequence.
     
 0.936
Q84ZN9_ORYSJ
Os07g0208200 protein.
     
 0.931
Q6Z2E1_ORYSJ
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin.
   
 
 0.927
Q53NH8_ORYSJ
cDNA clone:J023061A07, full insert sequence.
   
 
 0.924
Q0ITJ0_ORYSJ
Os11g0249600 protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.912
Q53WM8_ORYSJ
Pectinesterase.
   
 
 0.903
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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