STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0W7D2Os04g0188800 protein. (107 aa)    
Predicted Functional Partners:
A0A0P0XPV0
Os09g0544500 protein.
   
 0.905
Q6K7A1_ORYSJ
cDNA clone:J013042H05, full insert sequence.
   
 0.905
Q0D730_ORYSJ
cDNA clone:J033048J08, full insert sequence.
   
 0.882
Q0DQD2_ORYSJ
Os03g0607800 protein.
   
 0.882
SE14
Lysine-specific demethylase SE14; Histone demethylase that demethylates 'Lys-4' (H3K4me) of histone H3. Involved in the control of flowering time. Has a suppressive effect on floral transition under long day conditions through the demethylation of H3K4me3 in the promoter region of the flower-promoting signal HD3B/RFT1.
   
 0.875
A0A0N7KIF9
Os04g0101300 protein.
    
 0.853
A0A0P0W600
Os04g0101100 protein.
    
 0.853
Q2R2X7_ORYSJ
MRG family protein, putative, expressed.
    
 0.853
A0A0P0W9D8
Os04g0339800 protein.
   
 0.835
AGI_ORYSJ
Lectin 10 kDa peptide; N-acetyl-D-glucosamine binding lectin.
   
 0.835
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.