Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WAF9Os04g0422900 protein. (228 aa)    
Predicted Functional Partners:
A0A0P0WU01
Os06g0190950 protein.
  
   
 0.721
Q943M0_ORYSJ
cDNA clone:J033039F18, full insert sequence.
  
   
 0.528
Q53NM6_ORYSJ
cDNA clone:002-108-F06, full insert sequence.
  
   
 0.514
A0A0P0WKM6
Os05g0320350 protein.
  
     0.509
Q8W314_ORYSJ
Threonine dehydratase.
   
 
  0.490
C7IX29_ORYSJ
Os01g0932700 protein.
     
  0.487
C7J057_ORYSJ
Os03g0860000 protein.
     
  0.487
C7J1U6_ORYSJ
Os04g0589400 protein.
     
  0.487
SERR
Serine racemase; Catalyzes the synthesis of D-serine from L-serine. Has dehydratase activity towards both L-serine and D-serine.
     
  0.487
A0A0P0WFT7
Os04g0644200 protein.
      
 0.425
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
Server load: medium (48%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.