Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WAP7Os04g0432200 protein. (73 aa)    
Predicted Functional Partners:
Q8LHF3_ORYSJ
Os01g0681600 protein.
    
 0.912
Q6ZGX8_ORYSJ
cDNA clone:J033091B08, full insert sequence; Belongs to the adaptor complexes medium subunit family.
   
 0.872
A0A0N7KG12
Os02g0729400 protein.
   
 0.850
B1153E06.24
Zinc finger CCCH domain-containing protein 45.
   
 0.847
A0A0P0VSF7
Os03g0112101 protein.
   
  0.803
Q0DVU5_ORYSJ
Os03g0112400 protein.
   
  0.803
A0A0P0V7B9
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.785
Q7XDT2_ORYSJ
KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.
   
 0.785
A0A0P0VIS5
Os02g0462401 protein.
    
 0.776
Q2QW51_ORYSJ
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
 0.776
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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