STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WAY5Os04g0452900 protein. (74 aa)    
Predicted Functional Partners:
A0A0P0VSF7
Os03g0112101 protein.
    
  0.543
Q0DVU5_ORYSJ
Os03g0112400 protein.
    
  0.543
A0A0P0V5G8
Os01g0626200 protein.
    
  0.478
Q0DRT9_ORYSJ
Os03g0355600 protein.
    
  0.478
Q0JL39_ORYSJ
cDNA clone:J013088A19, full insert sequence.
    
  0.478
mtRPL27b
cDNA clone:001-110-H03, full insert sequence.
    
  0.478
Q7XMA7_ORYSJ
Os04g0321500 protein.
    
  0.478
A0A0P0VIS5
Os02g0462401 protein.
    
  0.458
Q2QW51_ORYSJ
AP complex subunit sigma; Belongs to the adaptor complexes small subunit family.
    
  0.458
Q6K4Y9_ORYSJ
Os02g0462300 protein.
    
  0.458
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.