Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WC43Os04g0503600 protein. (159 aa)    
Predicted Functional Partners:
Q658G8_ORYSJ
cDNA clone:001-131-A02, full insert sequence; Belongs to the AAA ATPase family.
    
 0.705
A0A0P0WLE7
Os05g0364500 protein.
    
 0.651
Q6EQ04_ORYSJ
Os09g0416900 protein.
    
 
 0.642
B9F3N3_ORYSJ
Os02g0789100 protein.
    
 
 0.638
Q0DDZ0_ORYSJ
Os06g0188000 protein.
    
 
 0.626
A0A0P0WKJ4
Os05g0315100 protein.
   
   0.616
Q6K3D4_ORYSJ
Os02g0281000 protein.
    
  0.599
A0A0P0W983
RING-type E3 ubiquitin transferase.
    
 
 0.571
PUB12
U-box domain-containing protein 12; Possesses E3 ubiquitin-protein ligase in vitro.
    
 
 0.571
Q0J9D7_ORYSJ
cDNA clone:J023042D01, full insert sequence.
    
 
 0.567
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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