Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WCK8Os04g0512750 protein. (265 aa)    
Predicted Functional Partners:
Q84T85_ORYSJ
Os03g0853700 protein.
   
 0.942
Q0DNQ5_ORYSJ
Os03g0740700 protein.
   
  0.937
Q5Z414_ORYSJ
cDNA clone:J023104M24, full insert sequence.
    
  0.917
Q2QM64_ORYSJ
G-patch domain containing protein, expressed.
  
  
 
0.907
Q5Z7Y7_ORYSJ
cDNA clone:002-108-E04, full insert sequence.
    
  0.903
Q5Z7Y9_ORYSJ
cDNA clone:002-150-F09, full insert sequence.
    
  0.903
Q5Z9F9_ORYSJ
cDNA clone:J023085C01, full insert sequence.
    
  0.903
A0A0P0XCN7
Os08g0199900 protein.
   
 0.891
Q10MC6_ORYSJ
Pre-mRNA splicing factor ATP-dependent RNA helicase, putative, expressed.
   
 0.891
OJ1001_G09.14
Zinc finger CCCH domain-containing protein 59.
   
 0.878
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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