Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WD92Os04g0539300 protein. (259 aa)    
Predicted Functional Partners:
ALDH1a
cDNA clone:002-117-A10, full insert sequence; Belongs to the aldehyde dehydrogenase family.
    
 0.939
Q0DB86_ORYSJ
Os06g0592400 protein.
    
 0.938
Q94JC6_ORYSJ
Os01g0591300 protein; Belongs to the aldehyde dehydrogenase family.
    
 0.936
Q6K3G8_ORYSJ
cDNA clone:J023051O20, full insert sequence.
   
 0.925
COMT
Flavone 3'-O-methyltransferase 1; Methylates OH residues of flavonoid compounds. Can methylate eriodictyol, luteolin, quercetin and taxifolin. Methylates caffeate to produce ferrulate. Catalyzes the methylation of monolignols, the lignin precursors. Functions cooperatively with CAD2 in the culm internodes for the biosynthesis of monolignols. May be involved in lignin biosynthesis in leaves and roots. Involved in syringyl lignin biosynthesis. Can function as 5-hydroxyconiferaldehyde O- methyltransferase in the biosynthetic pathway to syringyl lignin. Involved in melatonin biosynthesis. [...]
     
 0.924
4CLL9
4-coumarate--CoA ligase-like 9.
    
 0.924
4CL2
Probable 4-coumarate--CoA ligase 2.
    
 0.917
Q6H817_ORYSJ
cDNA clone:J023064M01, full insert sequence.
   
 0.913
A0A0P0Y086
Os11g0205400 protein.
    
 0.896
4CLL1
4-coumarate--CoA ligase-like 1.
    
 0.896
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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