A0A0P0WDT4 protein (Oryza sativa Japonica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

A0A0P0WDT4

Os04g0560500 protein. (546 aa)

Predicted Functional Partners:

A0A0P0XPV0

0.736

Q6K7A1_ORYSJ

0.736

Q2QT64_ORYSJ

0.697

Q6YUU2_ORYSJ

0.697

A0A0N7KLN2

0.686

A0A0P0VBB9

0.686

Q0D6A3_ORYSJ

0.686

Q0D6A4_ORYSJ

0.686

Q6K6A1_ORYSJ

0.686

PSY3

0.673

Your Current Organism:

Oryza sativa Japonica

NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0N7KLN2	A0A0P0VBB9	A0A0N7KLN2	A0A0P0VBB9	Os06g0183800 protein.	Os01g0881000 protein.	0.942
A0A0N7KLN2	A0A0P0WDT4	A0A0N7KLN2	A0A0P0WDT4	Os06g0183800 protein.	Os04g0560500 protein.	0.686
A0A0N7KLN2	A0A0P0XPV0	A0A0N7KLN2	A0A0P0XPV0	Os06g0183800 protein.	Os09g0544500 protein.	0.876
A0A0N7KLN2	Q6K7A1_ORYSJ	A0A0N7KLN2	Q6K7A1	Os06g0183800 protein.	cDNA clone:J013042H05, full insert sequence.	0.876
A0A0P0VBB9	A0A0N7KLN2	A0A0P0VBB9	A0A0N7KLN2	Os01g0881000 protein.	Os06g0183800 protein.	0.942
A0A0P0VBB9	A0A0P0WDT4	A0A0P0VBB9	A0A0P0WDT4	Os01g0881000 protein.	Os04g0560500 protein.	0.686
A0A0P0VBB9	A0A0P0XPV0	A0A0P0VBB9	A0A0P0XPV0	Os01g0881000 protein.	Os09g0544500 protein.	0.876
A0A0P0VBB9	Q6K7A1_ORYSJ	A0A0P0VBB9	Q6K7A1	Os01g0881000 protein.	cDNA clone:J013042H05, full insert sequence.	0.876
A0A0P0WDT4	A0A0N7KLN2	A0A0P0WDT4	A0A0N7KLN2	Os04g0560500 protein.	Os06g0183800 protein.	0.686
A0A0P0WDT4	A0A0P0VBB9	A0A0P0WDT4	A0A0P0VBB9	Os04g0560500 protein.	Os01g0881000 protein.	0.686
A0A0P0WDT4	A0A0P0XPV0	A0A0P0WDT4	A0A0P0XPV0	Os04g0560500 protein.	Os09g0544500 protein.	0.736
A0A0P0WDT4	PSY3	A0A0P0WDT4	B6UV92	Os04g0560500 protein.	Phytoene synthase 3, chloroplastic; Catalyzes the conversion of geranylgeranyl diphosphate to phytoene. Mediates the first committed step in carotenoid biosynthesis. May play a role in regulating carotenoid flux in response to abiotic stress in roots. May control flux to carotenoid precursors that are required for abiotic stress-induced abscisic acid (ABA) formation in roots.	0.673
A0A0P0WDT4	Q0D6A3_ORYSJ	A0A0P0WDT4	Q0D6A3	Os04g0560500 protein.	Os07g0497100 protein.	0.686
A0A0P0WDT4	Q0D6A4_ORYSJ	A0A0P0WDT4	Q0D6A4	Os04g0560500 protein.	Os07g0497000 protein.	0.686
A0A0P0WDT4	Q2QT64_ORYSJ	A0A0P0WDT4	Q2QT64	Os04g0560500 protein.	cDNA clone:J013058N03, full insert sequence.	0.697
A0A0P0WDT4	Q6K6A1_ORYSJ	A0A0P0WDT4	Q6K6A1	Os04g0560500 protein.	Os02g0817000 protein.	0.686
A0A0P0WDT4	Q6K7A1_ORYSJ	A0A0P0WDT4	Q6K7A1	Os04g0560500 protein.	cDNA clone:J013042H05, full insert sequence.	0.736
A0A0P0WDT4	Q6YUU2_ORYSJ	A0A0P0WDT4	Q6YUU2	Os04g0560500 protein.	Os02g0190600 protein.	0.697
A0A0P0XPV0	A0A0N7KLN2	A0A0P0XPV0	A0A0N7KLN2	Os09g0544500 protein.	Os06g0183800 protein.	0.876
A0A0P0XPV0	A0A0P0VBB9	A0A0P0XPV0	A0A0P0VBB9	Os09g0544500 protein.	Os01g0881000 protein.	0.876

page 1 of 3

Server load: medium (44%) [HD]

Permalink

Network

Co-occurrence

Experiments

Co-expression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2026

Credits

Access

Info

About