Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
A0A0P0WF33Os04g0629000 protein. (56 aa)    
Predicted Functional Partners:
Q337M1_ORYSJ
Peroxisome biogenesis protein 12; Required for peroxisome biogenesis and for PTS1- and PTS2- dependent protein import into peroxisomes. Belongs to the pex2/pex10/pex12 family.
      
 0.538
A0A0P0WNQ0
Os05g0472300 protein.
      
 0.524
MED17
Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
      
 0.524
Q67WC9_ORYSJ
cDNA clone:006-305-A11, full insert sequence.
      
 0.524
Q0DSM5_ORYSJ
Os03g0299600 protein.
      
 0.474
Q5W6N6_ORYSJ
cDNA clone:002-176-A02, full insert sequence.
      
 0.474
B9FFZ3_ORYSJ
Os04g0502000 protein.
      
 0.443
OJ1116_C07.8
OJ1116_C07.8 protein.
      
 0.443
A0A0N7KQ46
Os08g0511500 protein.
      
 0.423
Q10AI1_ORYSJ
Transducin family protein, putative, expressed.
      
 0.423
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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