STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WFB1Os04g0624450 protein. (197 aa)    
Predicted Functional Partners:
C7IXC9_ORYSJ
Os01g0793300 protein.
  
 
  0.920
Q6YX88_ORYSJ
cDNA clone:006-305-H09, full insert sequence.
    
 0.903
Q6ZA50_ORYSJ
cDNA clone:J013053F13, full insert sequence.
    
 0.903
Q6ZGM1_ORYSJ
cDNA clone:J023131N03, full insert sequence.
    
 0.903
Q8LHK9_ORYSJ
Transcription elongation factor SPT4 homolog; May regulate transcription elongation by RNA polymerase II. May enhance transcriptional pausing at sites proximal to the promoter, which may in turn facilitate the assembly of an elongation competent RNA polymerase II complex; Belongs to the SPT4 family.
    
 0.896
CDKD-1
Cyclin-dependent kinase D-1; CDK-activating kinase that may control G1/S phase progression. May control the rate of cell differentiation to accomplish proper development of organs, or in response to a changing environment. Forms a complex with cyclin CYCH1-1 that phosphorylates CDKA-1 and the C-terminal domain (CTD) of the large subunit of RNA polymerase II.
    
 0.883
Q2QX64_ORYSJ
cDNA clone:J023025N02, full insert sequence.
    
 0.868
Q5Z6Y1_ORYSJ
cDNA clone:001-017-G05, full insert sequence.
     
 0.852
B7F9H3_ORYSJ
cDNA, clone: J080032M07, full insert sequence.
    
 0.851
A0A0P0X0W6
Os06g0697400 protein.
    
 0.850
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.