Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WFP9Os04g0653100 protein. (307 aa)    
Predicted Functional Partners:
Q6K2F2_ORYSJ
cDNA clone:002-175-E10, full insert sequence.
    
   0.769
B7FAK3_ORYSJ
cDNA, clone: J100080N01, full insert sequence.
    
 
 0.708
Q5QM65_ORYSJ
Os01g0821700 protein.
      
 0.667
B7F9A6_ORYSJ
cDNA, clone: J075150J23, full insert sequence.
      
 0.626
Q7XQN3_ORYSJ
cDNA clone:006-202-G01, full insert sequence.
      
 0.626
A0A0P0W585
Os03g0811850 protein.
   
   0.611
Q0DFC8_ORYSJ
cDNA clone:002-104-B01, full insert sequence.
   
   0.611
Q7EZD3_ORYSJ
Os08g0157900 protein.
   
   0.611
Q7XEN6_ORYSJ
cDNA, clone: J075155G16, full insert sequence.
   
   0.611
Q6ZIW1_ORYSJ
cDNA clone:J033071F13, full insert sequence.
      
 0.553
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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