Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WGF1Os04g0682600 protein. (71 aa)    
Predicted Functional Partners:
A0A0P0VJN6
Os02g0522100 protein.
  
     0.527
A0A0P0XDW3
Os08g0210300 protein.
  
     0.524
Q0JAE0_ORYSJ
Os04g0603800 protein.
  
     0.517
A0A0N7KQP6
Os09g0375700 protein.
  
     0.515
Q6ZH84_ORYSJ
cDNA clone:J013072E12, full insert sequence.
     
  0.513
Q7XK43_ORYSJ
Os04g0476800 protein.
     
  0.513
Q652S1_ORYSJ
cDNA clone:J013116E07, full insert sequence.
    
  0.512
A0A0N7KDE1
Os01g0640100 protein.
  
     0.494
A0A0N7KTK3
Os12g0142900 protein.
  
     0.485
A0A0P0YAF4
Os12g0499874 protein.
  
     0.477
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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