Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WGP3Os04g0689500 protein. (356 aa)    
Predicted Functional Partners:
A0A0P0VTQ7
Os03g0173301 protein.
    
   0.651
MUB4
Membrane-anchored ubiquitin-fold protein 4; May serve as docking site to facilitate the association of other proteins to the plasma membrane.
      
 0.519
A0A0P0XY03
Os11g0109950 protein.
    
   0.458
A0A0P0Y662
Os12g0110050 protein.
    
   0.458
RAPTOR1
Regulatory-associated protein of TOR 1; Component of TORC1 complex, which is an essential cell growth regulator that controls plant development. Acts by recruiting substrates for TOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Belongs to the WD repeat RAPTOR family.
    
   0.458
RAPTOR2
Regulatory-associated protein of TOR 2; Component of TORC1 complex, which is an essential cell growth regulator that controls plant development. Acts by recruiting substrates for TOR. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Belongs to the WD repeat RAPTOR family.
    
   0.458
Q652K7_ORYSJ
Os09g0531100 protein.
      
 0.447
Q60E59_ORYSJ
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
      
 0.415
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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