Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WI62Os05g0149300 protein. (186 aa)    
Predicted Functional Partners:
Q7XQ85_ORYSJ
cDNA clone:002-105-C04, full insert sequence.
     
 0.950
ACC1
1-aminocyclopropane-1-carboxylate synthase 1; Catalyzes the formation of 1-aminocyclopropane-1-carboxylate, a direct precursor of ethylene in higher plants.
     
 0.945
A0A0P0WIY3
Os05g0196600 protein.
     
 0.890
A0A0P0UZP7
Os01g0192900 protein.
     
 0.876
Q5W6F9_ORYSJ
Os05g0319200 protein.
     
 0.876
Q9SNN8_ORYSJ
cDNA clone:J013002G02, full insert sequence.
     
 0.827
A0A0P0WYH4
Os06g0573900 protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
  0.778
ACO1
1-aminocyclopropane-1-carboxylate oxidase 1.
     
  0.736
Q67UG1_ORYSJ
cDNA clone:001-047-C08, full insert sequence; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
  0.736
Q6ZHG2_ORYSJ
cDNA clone:001-016-B02, full insert sequence; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
  0.736
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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