STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WIH1Os05g0163250 protein. (559 aa)    
Predicted Functional Partners:
Q69V60_ORYSJ
cDNA clone:J033113H11, full insert sequence.
   
 0.994
ERDJ2
DnaJ protein ERDJ2; May be required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane.
   
 0.984
A0A0P0VDW4
Os02g0108700 protein.
   
 0.979
A0A0P0VDW6
Os02g0106966 protein.
   
 0.979
Q0E4P2_ORYSJ
Os02g0107000 protein.
   
 0.979
Q84MP1_ORYSJ
U5 small nuclear ribonucleoprotein 200 kDa helicase, putative.
   
 0.979
A0A0P0V1B4
Os01g0263600 protein.
   
 0.969
Q0IWN2_ORYSJ
Os10g0498600 protein.
   
 0.969
OsJ_12293
DEAD-box ATP-dependent RNA helicase 21; ATP-dependent RNA helicase involved in mRNA splicing. May destabilize the U1/5'-splice site duplex to permit an effective competition for the 5'-splice site by the U6 snRNA, resulting in the switch between U1 and U6 at the 5'-splice site. May also act to unwind the U4/U6 base-pairing interaction in the U4/U6/U5 snRNP, facilitating the first covalent step of splicing (By similarity); Belongs to the DEAD box helicase family. DDX23/PRP28 subfamily.
   
 0.968
P0505H05.40
DEAD-box ATP-dependent RNA helicase 22.
   
 0.968
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.