STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WIY3Os05g0196600 protein. (452 aa)    
Predicted Functional Partners:
A0A0P0VH43
Os02g0254700 protein.
   
 0.967
METK3
S-adenosylmethionine synthase 3; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The reaction comprises two steps that are both catalyzed by the same enzyme: formation of S-adenosylmethionine (AdoMet) and triphosphate, and subsequent hydrolysis of the triphosphate.
  
 0.958
A0A0P0WYH4
Os06g0573900 protein; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.957
OsSPDS2
cDNA clone:J013105J05, full insert sequence; Belongs to the spermidine/spermine synthase family.
   
 0.955
SPDSYN1
Spermidine synthase 1; Belongs to the spermidine/spermine synthase family.
   
 0.949
NAS1
Nicotianamine synthase 1; Synthesizes nicotianamine, a polyamine that is the first intermediate in the synthesis of the phytosiderophores of the mugineic acid type found in gramineae which serve as a sensor for the physiological iron status within the plant, and/or might be involved in the transport of iron; Belongs to the nicotianamine synthase (NAS)-like family.
     
  0.942
Q53P53_ORYSJ
1-aminocyclopropane-1-carboxylate oxidase, putative, expressed; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.940
Q6ZHG2_ORYSJ
cDNA clone:001-016-B02, full insert sequence; Belongs to the iron/ascorbate-dependent oxidoreductase family.
     
 0.934
MET1A
DNA (cytosine-5)-methyltransferase 1A; Probably methylates CpG residues and maintains DNA methylation. May be involved in methylation-dependent gene silencing. May play a minor role in the maintenance of DNA methylation. Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
     
 0.933
Q75KG4_ORYSJ
S-adenosylmethionine decarboxylase proenzyme.
     
 0.925
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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