STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WJU2Os05g0249800 protein. (537 aa)    
Predicted Functional Partners:
B9F460_ORYSJ
Os02g0810450 protein.
   
 0.986
Q2QNF3_ORYSJ
60S ribosomal protein L2, putative, expressed.
  
 0.970
RPS16A
40S ribosomal protein S16.
  
 0.962
A0A0P0XU17
Os10g0411700 protein.
  
 0.961
Q9LWD2_ORYSJ
cDNA clone:001-104-E12, full insert sequence.
  
 
 0.960
RPS19A
40S ribosomal protein S19; Belongs to the eukaryotic ribosomal protein eS19 family.
   
 0.958
RPL27
50S ribosomal protein L27, chloroplastic; Belongs to the bacterial ribosomal protein bL27 family.
  
 
 0.957
Q7XZX4_ORYSJ
40S ribosomal protein S29, putative, expressed.
  
 0.956
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
  
 0.945
Q0JBZ7_ORYSJ
Os04g0501000 protein; Belongs to the universal ribosomal protein uL23 family.
  
 0.945
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.