Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WLI2Os05g0370300 protein. (434 aa)    
Predicted Functional Partners:
Q8LHF3_ORYSJ
Os01g0681600 protein.
    
 0.876
KU80
ATP-dependent DNA helicase 2 subunit KU80; Single-stranded DNA-dependent ATP-dependent helicase. Involved in DNA non-homologous end joining (NHEJ) required for double- strand break repair. When associated with KU70, binds to double- stranded telomeric and non-telomeric DNA sequences, but not to single- stranded DNA. Plays a role in maintaining telomere length. Acts as a negative regulator of telomerase (By similarity); Belongs to the ku80 family.
   
 
 0.833
Q67X81_ORYSJ
cDNA clone:001-011-A07, full insert sequence.
   
  0.820
Q6Z7V3_ORYSJ
cDNA clone:J023081D16, full insert sequence.
   
  0.820
PRP19
Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair.
   
 0.792
Q10NP6_ORYSJ
Splicing factor 3A subunit 2, putative, expressed.
    
 0.791
Q6EQW6_ORYSJ
cDNA clone:J023052C02, full insert sequence.
    
 0.791
Q84MU4_ORYSJ
Pre-mRNA splicing factor PRP17, putative, expressed.
    
 0.791
A0A0P0VZ27
Os03g0428000 protein.
   
 
 0.785
A0A0P0X9C1
Os07g0626900 protein.
   
 
 0.785
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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