Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WLR2Os05g0388025 protein. (233 aa)    
Predicted Functional Partners:
Q6L543_ORYSJ
cDNA clone:002-107-B04, full insert sequence.
 
  
 0.789
Q7XLA1_ORYSJ
cDNA clone:002-180-G09, full insert sequence.
    
 0.703
B7ECH1_ORYSJ
cDNA clone:J013071M22, full insert sequence.
  
  
 0.697
Q2QYV1_ORYSJ
Outer membrane protein, OMP85 family protein, expressed.
  
  
 0.697
Q6ATX4_ORYSJ
Os05g0470800 protein.
  
  
 0.697
A0A0P0W8E2
Os04g0300600 protein.
    
 0.693
Q0JEB7_ORYSJ
cDNA, clone: J075170K16, full insert sequence.
    
 0.693
PAP3
Probable plastid-lipid-associated protein 3, chloroplastic.
  
  
 0.541
Q7F9Y6_ORYSJ
cDNA clone:J023147E13, full insert sequence.
   
  
 0.526
Q8H2U4_ORYSJ
cDNA clone:J023018E21, full insert sequence.
   
  
 0.526
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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