Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WM26Os05g0397800 protein. (143 aa)    
Predicted Functional Partners:
A0A0P0Y0Q1
Os11g0216100 protein.
    
 
 0.650
Q7XTL5_ORYSJ
Os04g0687300 protein.
    
 
 0.650
Q10PS9_ORYSJ
Os03g0222800 protein.
    
 
 0.647
Q10PT0_ORYSJ
Os03g0222700 protein.
    
 
 0.647
OJ1116_H10.13
Ferredoxin-thioredoxin reductase catalytic chain, chloroplastic; Catalytic subunit of the ferredoxin-thioredoxin reductase (FTR), which catalyzes the two-electron reduction of thioredoxins by the electrons provided by reduced ferredoxin.
      
 0.581
A0A0P0WLJ5
Os05g0374600 protein.
    
 
 0.580
A0A0P0WLL8
Os05g0374500 protein.
    
 
 0.580
Q0JNP9_ORYSJ
Os01g0273500 protein.
    
 
 0.580
B1078G07.38
Probable membrane-associated 30 kDa protein, chloroplastic; Belongs to the PspA/IM30 family.
      
 0.541
Q0D6L9_ORYSJ
Os07g0467200 protein.
      
 0.501
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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