Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WM47Os05g0398100 protein. (224 aa)    
Predicted Functional Partners:
Q10E40_ORYSJ
cDNA clone:001-102-E08, full insert sequence.
    
 
 0.661
Q6K3D4_ORYSJ
Os02g0281000 protein.
    
   0.624
A0A0P0V586
Os01g0616333 protein.
    
 
 0.590
Q0DJZ3_ORYSJ
Os05g0210600 protein.
    
 
 0.590
Q0JL88_ORYSJ
Os01g0616300 protein.
    
 
 0.590
Q6YUA1_ORYSJ
Os02g0100300 protein.
      
 0.540
A0A0P0UZ49
Os01g0184200 protein.
    
 
 0.503
Q7X7L0_ORYSJ
cDNA clone:001-132-F01, full insert sequence.
    
 
 0.503
Q75M01_ORYSJ
cDNA clone:J013041K03, full insert sequence.
      
 0.480
Q0J0G8_ORYSJ
Os09g0510200 protein.
    
   0.465
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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