Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WM58Os05g0396000 protein. (121 aa)    
Predicted Functional Partners:
Q7XX94_ORYSJ
Vacuolar protein sorting-associated protein 41 homolog; Required for vacuolar assembly and vacuolar traffic.
    
 
 0.505
Q7XBS8_ORYSJ
cDNA clone:J013086I05, full insert sequence.
    
 
 0.451
A0A0P0VV34
Os03g0235300 protein.
    
 
 0.450
Q6Z8E5_ORYSJ
Os02g0699000 protein.
    
 
 0.450
Q0DEQ5_ORYSJ
cDNA clone:J013037K06, full insert sequence.
      
 0.443
Q336S5_ORYSJ
U-box domain containing protein, expressed.
      
 0.443
Q10RG4_ORYSJ
EDR1, putative, expressed.
      
 0.438
Q656M7_ORYSJ
Os06g0255400 protein.
      
 0.437
Q9AUQ4_ORYSJ
Phosphoglucomutase, cytoplasmic 2, putative, expressed; Belongs to the phosphohexose mutase family.
     
 0.417
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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