Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
A0A0P0WML4Os05g0417900 protein. (98 aa)    
Predicted Functional Partners:
Q338J4_ORYSJ
Methionyl-tRNA synthetase, putative, expressed; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.908
P0561B08.33
Probable methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.908
P0453E03.116
Elongation factor 1-beta; EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.748
P0616D06.117
Elongation factor 1-delta 1; EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.748
EF1D2_ORYSJ
Elongation factor 1-delta 2; EF-1-beta and EF-1-beta' stimulate the exchange of GDP bound to EF-1-alpha to GTP; Belongs to the EF-1-beta/EF-1-delta family.
   
 0.748
Q8S5M6_ORYSJ
Glutamyl-tRNA synthetase family protein, expressed; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  0.669
Q9LIZ8_ORYSJ
Os01g0271200 protein; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
  0.669
Q6K2F2_ORYSJ
cDNA clone:002-175-E10, full insert sequence.
    
   0.625
HGO
Homogentisate 1,2-dioxygenase.
  
 
 0.616
Q10Q53_ORYSJ
Methionyl-tRNA synthetase, putative, expressed; Belongs to the class-I aminoacyl-tRNA synthetase family.
   
 0.605
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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