Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WMP0Os05g0427600 protein. (559 aa)    
Predicted Functional Partners:
A0A0P0V1T6
Os01g0314700 protein.
    
 0.764
A0A0P0WV17
Os06g0237502 protein.
    
 0.681
Q5SNE4_ORYSJ
Os01g0189100 protein.
  
 
  0.668
A0A0N7KPN3
Os08g0325400 protein.
  
 
  0.667
A0A0P0VJ73
Os02g0494000 protein.
  
 
  0.667
A0A0P0W245
Os03g0680100 protein.
  
 
  0.666
A0A0N7KFB4
Os02g0491900 protein.
  
 
  0.665
Q5VQZ7_ORYSJ
cDNA clone:J033087A12, full insert sequence.
  
 
  0.665
A0A0P0UZD9
Os01g0188900 protein.
  
 
  0.664
Q10GN0_ORYSJ
cDNA, clone: J065146D10, full insert sequence.
  
 
  0.664
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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