Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WMP2Os05g0431266 protein. (78 aa)    
Predicted Functional Partners:
Q0DRG6_ORYSJ
Os03g0387000 protein.
   
 0.938
PRP19
Pre-mRNA-processing factor 19; Probable ubiquitin-protein ligase which is mainly involved pre-mRNA splicing and DNA repair.
   
 0.937
Q6K5F4_ORYSJ
cDNA clone:002-107-H03, full insert sequence.
    
 0.932
C7J4B5_ORYSJ
Os06g0523900 protein.
   
 0.931
P0587F01.11
cDNA clone:J023095B21, full insert sequence.
   
 0.931
Q8S5Y7_ORYSJ
cDNA clone:J023047D02, full insert sequence.
   
 0.931
Q5Z7Y7_ORYSJ
cDNA clone:002-108-E04, full insert sequence.
    
 0.917
Q5Z7Y9_ORYSJ
cDNA clone:002-150-F09, full insert sequence.
    
 0.917
Q7XIR8_ORYSJ
Os07g0508000 protein.
   
 0.915
A0A0P0Y041
Os11g0186600 protein.
   
 0.898
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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