STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WNH2Os05g0474500 protein. (510 aa)    
Predicted Functional Partners:
Q6ETY0_ORYSJ
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
   
 
 0.871
A0A0P0W4D5
Os03g0801600 protein.
   
 
 0.840
Q7G607_ORYSJ
cDNA clone:J023011O11, full insert sequence.
   
 
 0.840
Q0DPM9_ORYSJ
Os03g0679100 protein.
    
 
 0.808
Q2QQB3_ORYSJ
Vacuolar protein sorting 26, putative, expressed.
    
 
 0.808
Q2R0X0_ORYSJ
Vacuolar protein sorting 26, putative, expressed.
    
 
 0.808
A0A0P0X1D1
Os06g0729650 protein.
    
 0.715
HCF136
Photosystem II stability/assembly factor HCF136, chloroplastic; Essential for photosystem II (PSII) biogenesis; required for assembly of an early intermediate in PSII assembly that includes D2 (psbD) and cytochrome b559; Belongs to the Ycf48 family.
    
 0.715
Q0JFL8_ORYSJ
Os01g0973300 protein.
    
 0.700
A0A0P0XY01
Os11g0104866 protein.
    
 0.671
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.