Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WNH2Os05g0474500 protein. (510 aa)    
Predicted Functional Partners:
Q6ETY0_ORYSJ
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.855
A0A0P0W4D5
Os03g0801600 protein.
   
 
 0.816
Q7G607_ORYSJ
cDNA clone:J023011O11, full insert sequence.
   
 
 0.792
Q6YUT9_ORYSJ
cDNA clone:002-175-A09, full insert sequence.
    
 
 0.783
Q0DPM9_ORYSJ
Os03g0679100 protein.
   
 
 0.775
Q2QQB3_ORYSJ
Vacuolar protein sorting 26, putative, expressed.
   
 
 0.775
Q2R0X0_ORYSJ
Vacuolar protein sorting 26, putative, expressed.
   
 
 0.775
Q0JFL8_ORYSJ
Os01g0973300 protein.
    
 0.660
A0A0P0XYL0
Os10g0575200 protein.
  
 
 
 0.629
Q5N7G9_ORYSJ
cDNA clone:J013066C10, full insert sequence.
    
 
 0.622
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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