Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WPZ2Os05g0525501 protein. (218 aa)    
Predicted Functional Partners:
Q0JH05_ORYSJ
cDNA, clone: J065203A13, full insert sequence.
  
 
  0.649
Q8S0M3_ORYSJ
Os01g0891700 protein.
  
 
  0.620
Q6K3D4_ORYSJ
Os02g0281000 protein.
    
  0.599
A0A0P0UYC4
Os01g0160900 protein.
  
 
  0.567
Q5VRG4_ORYSJ
cDNA clone:J023022E12, full insert sequence.
  
  0.559
A0A0P0Y785
Os12g0157550 protein.
  
 
  0.526
Q8H609_ORYSJ
cDNA clone:J023101N24, full insert sequence.
  
 
  0.522
A0A0P0VET5
Os02g0157501 protein.
  
 
  0.517
Q6K8U3_ORYSJ
cDNA clone:001-007-A03, full insert sequence.
  
 
  0.517
Q0JFA6_ORYSJ
Os04g0119800 protein.
  
 
  0.508
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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