Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WRF1Os06g0111200 protein. (428 aa)    
Predicted Functional Partners:
A0A0P0UYZ4
Os01g0185400 protein.
    
 0.849
Q0DY92_ORYSJ
Os02g0708300 protein.
   
 0.834
Q0JRD5_ORYSJ
cDNA clone:001-025-F02, full insert sequence.
   
 0.834
CSN5
COP9 signalosome complex subunit 5; Probable protease subunit of the COP9 signalosome complex (CSN), a complex involved in various cellular and developmental processes such as photomorphogenesis and response to hormones (By similarity). The CSN complex is an essential regulator of the ubiquitin (Ubl) conjugation pathway by mediating the deneddylation of the cullin subunits of SCF-type E3 ligase complexes, leading to decrease the Ubl ligase activity of SCF (By similarity). Involved in early response to iron deficiency (Probable).
   
 0.831
A0A0N7KJ29
Os04g0431200 protein.
    
 0.827
Q5JLZ9_ORYSJ
cDNA clone:J033086D07, full insert sequence.
   
 0.813
Q6L508_ORYSJ
cDNA clone:001-034-F08, full insert sequence; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.784
Q943L1_ORYSJ
cDNA clone:001-039-E11, full insert sequence; Belongs to the ubiquitin-conjugating enzyme family.
    
 0.784
CKS1
Cyclin-dependent kinases regulatory subunit 1; Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function; Belongs to the CKS family.
    
 0.749
BSL1
Serine/threonine-protein phosphatase BSL1 homolog.
   
 0.728
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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