Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WS78Os06g0116966 protein. (180 aa)    
Predicted Functional Partners:
A0A0P0V1T6
Os01g0314700 protein.
    
 0.625
Q6K3D4_ORYSJ
Os02g0281000 protein.
   
 0.583
Q652S1_ORYSJ
cDNA clone:J013116E07, full insert sequence.
    
  0.549
A0A0N7KFB4
Os02g0491900 protein.
   
  0.438
A0A0N7KHT9
Os03g0679800 protein.
   
  0.438
A0A0N7KHU0
Os03g0680600 protein.
   
  0.438
A0A0N7KPN3
Os08g0325400 protein.
   
  0.438
A0A0P0UZ90
Os01g0171100 protein.
   
  0.438
A0A0P0UZD9
Os01g0188900 protein.
   
  0.438
A0A0P0VJ73
Os02g0494000 protein.
   
  0.438
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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