Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WS98Pectate lyase. (473 aa)    
Predicted Functional Partners:
Q10PY4_ORYSJ
cDNA clone:001-127-F09, full insert sequence.
     
 0.934
A0A0P0VBN2
Os01g0891100 protein; Belongs to the glycosyl hydrolase 28 family.
     
 0.911
Q53WM8_ORYSJ
Pectinesterase.
  
 
 0.911
Q9S767_ORYSJ
Pectinesterase.
  
 
  0.911
Q5ZAW1_ORYSJ
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin.
  
 
  0.909
Q69J29_ORYSJ
Pectinesterase.
  
 
  0.909
A0A0P0WLF6
Pectinesterase.
  
 
  0.906
Q8LQA0_ORYSJ
Pectinesterase.
  
 
  0.906
Q6Z2E1_ORYSJ
Pectinesterase; Acts in the modification of cell walls via demethylesterification of cell wall pectin.
  
 
  0.904
Q7X6L1_ORYSJ
Os04g0641200 protein.
  
 
  0.901
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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