Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
TP1Trypsin-like peptidase 1. (243 aa)    
Predicted Functional Partners:
WDR12
Ribosome biogenesis protein WDR12 homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the WD repeat WDR12/YTM1 family.
   
 
 0.942
Q850Z4_ORYSJ
Os03g0831100 protein.
   
 
 0.941
B7EZK3_ORYSJ
cDNA clone:002-114-D09, full insert sequence.
   
 
 0.939
OsJ_01990
Ribosome production factor 2 homolog.
   
 
 0.939
Q84RU7_ORYSJ
cDNA clone:J023075L15, full insert sequence.
   
 
 0.937
Q6Z568_ORYSJ
cDNA clone:001-031-A04, full insert sequence.
   
 
 0.934
Q8H478_ORYSJ
60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.
   
 
 0.934
Q0DES6_ORYSJ
cDNA clone:J023145C13, full insert sequence.
   
   0.921
Q10LL9_ORYSJ
cDNA clone:001-025-A01, full insert sequence.
   
   0.918
A3BVU4_ORYSJ
cDNA, clone: J090081A12, full insert sequence.
   
   0.917
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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