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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WSW9Os06g0167000 protein. (1130 aa)    
Predicted Functional Partners:
Q69V60_ORYSJ
cDNA clone:J033113H11, full insert sequence.
   
 0.990
Q10PA9_ORYSJ
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.989
Q6YU78_ORYSJ
Small nuclear ribonucleoprotein Sm D3; Core component of the spliceosomal U1, U2, U4 and U5 small nuclear ribonucleoproteins (snRNPs), the building blocks of the spliceosome.
   
 0.989
ERDJ2
DnaJ protein ERDJ2; May be required for integral membrane and secreted preprotein translocation across the endoplasmic reticulum membrane.
   
 0.989
A0A0P0VDW4
Os02g0108700 protein.
   
 0.987
A0A0P0VDW6
Os02g0106966 protein.
   
 0.987
Q0E4P2_ORYSJ
Os02g0107000 protein.
   
 0.987
Q6YTY0_ORYSJ
Small nuclear ribonucleoprotein G.
   
 0.987
Q75K32_ORYSJ
Small nuclear ribonucleoprotein G.
   
 0.987
Q84MP1_ORYSJ
U5 small nuclear ribonucleoprotein 200 kDa helicase, putative.
   
 0.987
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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