Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WUT4Os06g0260500 protein. (527 aa)    
Predicted Functional Partners:
A0A0P0WVX6
Os06g0300200 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.898
Q5ZA41_ORYSJ
Os06g0300000 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.898
A0A0P0VLC3
Os02g0597900 protein.
    
  0.883
Q7XT17_ORYSJ
cDNA clone:J013001B01, full insert sequence.
    
  0.883
A0A0P0WVK1
Os06g0298700 protein.
    
  0.853
A0A0P0WVX3
Os06g0299600 protein.
    
  0.853
Q5ZA47_ORYSJ
cDNA clone:001-017-G10, full insert sequence; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.853
Q5ZA49_ORYSJ
Os06g0299200 protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.853
Q5ZA50_ORYSJ
cDNA clone:J013073H04, full insert sequence.
    
  0.853
Q7XQF8_ORYSJ
cDNA clone:001-019-E03, full insert sequence; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
    
  0.829
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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