Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WVB8Os06g0285900 protein. (233 aa)    
Predicted Functional Partners:
A0A0P0V1T6
Os01g0314700 protein.
    
 0.764
MUS81
Crossover junction endonuclease MUS81; Interacts with EME1 to form a DNA structure-specific endonuclease with substrate preference for branched DNA structures with a 5'-end at the branch nick. Typical substrates include 3'-flap structures, D-loops, replication forks, nicked Holliday junctions and also intact Holliday junctions with a reduced efficiency. May be required in mitosis for the processing of stalled or collapsed replication fork intermediates. Plays a role in DNA repair and in genotoxic stress-induced homologous recombination (HR) in somatic cells. Mediates a subset of meioti [...]
    
 0.666
C7J1U6_ORYSJ
Os04g0589400 protein.
    
 0.658
A0A0P0WVU8
Os06g0285100 protein.
    
 0.646
Q5JLP6_ORYSJ
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde.
    
 
 0.638
Q5VNF2_ORYSJ
Os06g0285400 protein.
    
 0.634
Q8S7V0_ORYSJ
Cytochrome P450 family protein, expressed.
    
 0.629
Os11g0638900
Armadillo-type fold domain containing protein.
     
 0.600
Q656M9_ORYSJ
Os06g0255200 protein.
   
 0.574
Q2R3E2_ORYSJ
cDNA clone:001-014-C05, full insert sequence; Belongs to the cytochrome P450 family.
    
 0.573
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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