STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WWI6Os06g0361200 protein. (419 aa)    
Predicted Functional Partners:
Q0DY89_ORYSJ
Os02g0708600 protein.
    
 0.880
Q0DY90_ORYSJ
cDNA clone:002-114-G07, full insert sequence.
    
 0.880
Q6YVE2_ORYSJ
cDNA clone:001-023-C01, full insert sequence.
     
 0.769
A0A0N7KF87
Os02g0457100 protein.
    
 0.754
A0A0P0VIN6
Os02g0457300 protein.
    
 0.754
A0A0P0VP17
Os02g0717600 protein.
    
 0.754
A0A0P0WTA4
Os06g0159725 protein.
    
 0.754
A0A0P0XPW5
Os09g0488700 protein.
    
 0.754
B9G1G1_ORYSJ
Os08g0481100 protein.
    
 0.754
H3
Histone H3.3; Variant histone H3 which replaces conventional H3 in a wide range of nucleosomes in active genes. Constitutes the predominant form of histone H3 in non-dividing cells and is incorporated into chromatin independently of DNA synthesis. Deposited at sites of nucleosomal displacement throughout transcribed genes, suggesting that it represents an epigenetic imprint of transcriptionally active chromatin. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in [...]
    
 0.754
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.