Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WWP2Os06g0343700 protein. (379 aa)    
Predicted Functional Partners:
C7J1U6_ORYSJ
Os04g0589400 protein.
    
 0.721
Q656M9_ORYSJ
Os06g0255200 protein.
    
 0.708
Q10SC2_ORYSJ
FHA domain containing protein, expressed.
    
 0.656
Q0D724_ORYSJ
cDNA clone:J023085F17, full insert sequence.
   
  0.636
A0A0P0V1T6
Os01g0314700 protein.
    
 0.629
A0A0N7KR07
Os09g0484300 protein.
    
 0.620
KIN14I
Kinesin-like protein KIN-14I; Minus-end microtubule-dependent motor protein involved in the regulation of cell division.
    
 0.589
Q5NAK8_ORYSJ
cDNA clone:J033050N08, full insert sequence.
    
 0.566
LST8
Target of rapamycin complex subunit LST8; Component of TORC1 complex, which is an essential cell growth regulator that controls plant development. Acts by activating transcription, protein synthesis and ribosome biogenesis, and inhibiting mRNA degradation and autophagy. Belongs to the WD repeat LST8 family.
    
  0.550
A0A0P0XPV0
Os09g0544500 protein.
    
 
 0.546
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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