STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WXH6Os06g0520733 protein. (113 aa)    
Predicted Functional Partners:
A0A0P0UYC0
Os01g0159800 protein.
    
 0.808
A0A0P0XNJ4
Os09g0463900 protein.
    
 0.808
Q6ZJC8_ORYSJ
Os08g0477900 protein.
    
 0.808
Q75IR0_ORYSJ
cDNA clone:002-168-H12, full insert sequence.
    
 0.808
Q7XZF8_ORYSJ
Helix-loop-helix DNA-binding domain containing protein, expressed.
    
 0.808
Q9FTQ1_ORYSJ
Os01g0218100 protein.
    
 0.808
OsJ_019459
Zinc finger CCCH domain-containing protein 40.
   
 0.788
OsJ_23846
Zinc finger CCCH domain-containing protein 49.
   
 0.788
Q5Z9N8_ORYSJ
90 kDa heat shock protein.
   
 0.756
A0A0P0WHE2
Os05g0126300 protein.
    
 0.731
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.