STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0WY61Os06g0588700 protein. (347 aa)    
Predicted Functional Partners:
B7ELW5_ORYSJ
3' exoribonuclease family domain 1-containing protein, putative, expressed.
    
  0.771
Q6K837_ORYSJ
Os02g0805900 protein.
   
 0.698
A0A0P0XK57
Os09g0248000 protein.
    
 0.691
Q6Z0F0_ORYSJ
cDNA clone:J033001O09, full insert sequence.
    
 0.691
RRP46
Exosome complex exonuclease RRP46 homolog; Probable component of the exosome 3'->5' exoribonuclease complex, a complex that degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3'-untranslated regions. May form a homodimer separately from exosome complexes and function in DNA cleavage process. Binds double-stranded DNA (dsDNA) and single-stranded RNA (ssRNA), and possesses hydrolytic DNase and phosphorolytic RNase activities in vitro.
    
  0.628
B9G2C8_ORYSJ
Os09g0252000 protein.
    
  0.619
Q69UI6_ORYSJ
cDNA clone:001-119-G01, full insert sequence.
    
  0.619
Q75LC8_ORYSJ
3' exoribonuclease family, domain 1 containing protein, expressed.
    
  0.619
Q7XUA1_ORYSJ
cDNA clone:J033116C14, full insert sequence.
    
 0.619
A0A0P0W5Y1
Os03g0837000 protein.
    
  0.598
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.