Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0X040Os06g0687000 protein. (729 aa)    
Predicted Functional Partners:
A0A0P0VL75
Os02g0596500 protein.
    
 0.899
Q5Z4L5_ORYSJ
cDNA clone:J013093K12, full insert sequence.
   
 
 0.876
Q10SX2_ORYSJ
SNF7 family protein, expressed.
    
 0.871
Q7XI79_ORYSJ
Os07g0479400 protein.
    
 0.871
A0A0P0UY01
Os01g0141100 protein.
   
 0.861
Q5ZEN9_ORYSJ
Os01g0141300 protein; Belongs to the AAA ATPase family.
   
 0.861
Q6ETH5_ORYSJ
Os02g0159900 protein; Belongs to the AAA ATPase family.
   
 0.861
Q2QS10_ORYSJ
Os12g0443800 protein.
    
 0.825
Q658G8_ORYSJ
cDNA clone:001-131-A02, full insert sequence; Belongs to the AAA ATPase family.
    
 0.825
Q7X989_ORYSJ
Os07g0672500 protein.
    
 0.825
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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