Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0X0F2Os06g0682700 protein. (644 aa)    
Predicted Functional Partners:
Q6K7Q7_ORYSJ
Os02g0827300 protein.
   
 0.992
Q10DW3_ORYSJ
Splicing factor 3A subunit 3, putative, expressed.
   
 0.991
Q10NP6_ORYSJ
Splicing factor 3A subunit 2, putative, expressed.
   
 0.978
A0A0P0VFG2
Os02g0179900 protein.
   
 0.972
Q6EUK2_ORYSJ
cDNA clone:J023062O22, full insert sequence.
   
 0.967
A0A0P0VEN2
Os02g0137400 protein.
   
 0.955
Q0D7W8_ORYSJ
Os07g0203800 protein.
   
 0.955
Q0D7W9_ORYSJ
Os07g0203700 protein.
   
 0.955
Q8L460_ORYSJ
cDNA, clone: J100058K04, full insert sequence.
   
 0.954
A0A0P0Y2V6
Os11g0495400 protein.
   
 0.942
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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