A0A0P0X6W3 protein (Oryza sativa Japonica) - STRING interaction network

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query proteins and first shell of interactors

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second shell of interactors

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a 3D structure is known or predicted

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Edges represent protein-protein associations

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Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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Cooccurrence

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[Homology]

Score

A0A0P0X6W3

Os07g0533201 protein. (65 aa)

Predicted Functional Partners:

A0A0P0WLY1

0.938

A0A0P0WM13

0.938

A0A0P0XU08

0.923

Q7XDE1_ORYSJ

0.923

KIN14I

0.908

A0A0P0XZW3

0.906

A0A0P0V1T6

0.814

C7J1U6_ORYSJ

0.797

Q0DJB7_ORYSJ

0.787

Q10NA3_ORYSJ

0.787

Your Current Organism:

Oryza sativa Japonica

NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A0P0V1T6	A0A0P0WLY1	A0A0P0V1T6	A0A0P0WLY1	Os01g0314700 protein.	Os05g0392000 protein.	0.974
A0A0P0V1T6	A0A0P0WM13	A0A0P0V1T6	A0A0P0WM13	Os01g0314700 protein.	Os05g0392050 protein.	0.974
A0A0P0V1T6	A0A0P0X6W3	A0A0P0V1T6	A0A0P0X6W3	Os01g0314700 protein.	Os07g0533201 protein.	0.814
A0A0P0V1T6	C7J1U6_ORYSJ	A0A0P0V1T6	C7J1U6	Os01g0314700 protein.	Os04g0589400 protein.	0.973
A0A0P0V1T6	KIN14I	A0A0P0V1T6	Q7XPJ0	Os01g0314700 protein.	Kinesin-like protein KIN-14I; Minus-end microtubule-dependent motor protein involved in the regulation of cell division.	0.967
A0A0P0WLY1	A0A0P0V1T6	A0A0P0WLY1	A0A0P0V1T6	Os05g0392000 protein.	Os01g0314700 protein.	0.974
A0A0P0WLY1	A0A0P0WM13	A0A0P0WLY1	A0A0P0WM13	Os05g0392000 protein.	Os05g0392050 protein.	0.627
A0A0P0WLY1	A0A0P0X6W3	A0A0P0WLY1	A0A0P0X6W3	Os05g0392000 protein.	Os07g0533201 protein.	0.938
A0A0P0WLY1	C7J1U6_ORYSJ	A0A0P0WLY1	C7J1U6	Os05g0392000 protein.	Os04g0589400 protein.	0.953
A0A0P0WLY1	KIN14I	A0A0P0WLY1	Q7XPJ0	Os05g0392000 protein.	Kinesin-like protein KIN-14I; Minus-end microtubule-dependent motor protein involved in the regulation of cell division.	0.787
A0A0P0WLY1	Q0DJB7_ORYSJ	A0A0P0WLY1	Q0DJB7	Os05g0392000 protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.426
A0A0P0WLY1	Q10NA3_ORYSJ	A0A0P0WLY1	Q10NA3	Os05g0392000 protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.426
A0A0P0WM13	A0A0P0V1T6	A0A0P0WM13	A0A0P0V1T6	Os05g0392050 protein.	Os01g0314700 protein.	0.974
A0A0P0WM13	A0A0P0WLY1	A0A0P0WM13	A0A0P0WLY1	Os05g0392050 protein.	Os05g0392000 protein.	0.627
A0A0P0WM13	A0A0P0X6W3	A0A0P0WM13	A0A0P0X6W3	Os05g0392050 protein.	Os07g0533201 protein.	0.938
A0A0P0WM13	C7J1U6_ORYSJ	A0A0P0WM13	C7J1U6	Os05g0392050 protein.	Os04g0589400 protein.	0.953
A0A0P0WM13	KIN14I	A0A0P0WM13	Q7XPJ0	Os05g0392050 protein.	Kinesin-like protein KIN-14I; Minus-end microtubule-dependent motor protein involved in the regulation of cell division.	0.787
A0A0P0WM13	Q0DJB7_ORYSJ	A0A0P0WM13	Q0DJB7	Os05g0392050 protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.426
A0A0P0WM13	Q10NA3_ORYSJ	A0A0P0WM13	Q10NA3	Os05g0392050 protein.	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	0.426
A0A0P0X6W3	A0A0P0V1T6	A0A0P0X6W3	A0A0P0V1T6	Os07g0533201 protein.	Os01g0314700 protein.	0.814

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Network Stats

number of nodes:

3

number of edges:

2

average node degree:

1.33

avg. local clustering coefficient:

0.667

expected number of edges:

2

PPI enrichment p-value:

0.527

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006357

Regulation of transcription by RNA polymerase II

6 of 383

1.06

0.8

0.0040

GO:0006355

Regulation of transcription, DNA-templated

7 of 514

1.0

0.75

0.0040

GO:0050794

Regulation of cellular process

8 of 1320

0.65

0.44

0.0132

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003712

Transcription coregulator activity

6 of 66

1.82

2.78

2.64e-07

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0016592

Mediator complex

7 of 17

2.48

6.22

2.10e-13

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2881

Mediator complex

8 of 19

2.49

7.18

1.24e-15

CL:2888

Mediator complex

6 of 6

2.87

6.39

8.49e-13

Reactome Pathways

pathway

description

count in network

strength

signal

false discovery rate

MAP-212436

Generic Transcription Pathway

8 of 252

1.37

1.95

1.43e-07

MAP-73857

RNA Polymerase II Transcription

8 of 375

1.2

1.46

1.57e-06

MAP-74160

Gene expression (Transcription)

8 of 480

1.09

1.21

7.14e-06

MAP-2173796

SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription

2 of 5

2.47

1.14

0.0081

MAP-2173793

Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer

2 of 10

2.17

0.91

0.0203

(more ...)

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:1990508

CKM complex

2 of 2

2.87

1.11

0.0097

GOCC:0005634

Nucleus

8 of 1197

0.69

0.47

0.0123

GOCC:0032991

Protein-containing complex

9 of 2119

0.49

0.31

0.0458

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0010

Activator

6 of 20

2.34

4.94

6.39e-11

KW-0805

Transcription regulation

6 of 112

1.59

2.32

4.35e-07

KW-0539

Nucleus

6 of 316

1.14

1.16

8.73e-05

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