STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0X951Os07g0621500 protein. (1287 aa)    
Predicted Functional Partners:
Q8LHF3_ORYSJ
Os01g0681600 protein.
   
 0.952
Q657Z6_ORYSJ
cDNA clone:J013109E04, full insert sequence.
   
 0.939
A0A0P0WG07
Os04g0662100 protein.
   
  0.934
A0A0P0Y7P3
Os12g0166500 protein.
   
 0.932
Q6YW01_ORYSJ
cDNA clone:001-124-C09, full insert sequence.
   
 0.929
OJ1163_G08.29
Pre-mRNA-splicing factor SLU7; Participates in the second catalytic step of pre-mRNA splicing, when the free hydroxyl group of exon I attacks the 3'-splice site to generate spliced mRNA and the excised lariat intron. Belongs to the SLU7 family.
    
 0.926
OsJ_25257
DEAD-box ATP-dependent RNA helicase 36; Belongs to the DEAD box helicase family. DDX49/DBP8 subfamily.
   
 0.926
Q0DQG5_ORYSJ
Os03g0598200 protein.
   
 0.925
Q0DJF0_ORYSJ
Os05g0295100 protein.
   
 0.924
RPS27AB
Ubiquitin-40S ribosomal protein S27a-2; Ubiquitin exists either covalently attached to another protein, or free (unanchored). When covalently bound, it is conjugated to target proteins via an isopeptide bond either as a monomer (monoubiquitin), a polymer linked via different Lys residues of the ubiquitin (polyubiquitin chains) or a linear polymer linked via the initiator Met of the ubiquitin (linear polyubiquitin chains). Polyubiquitin chains, when attached to a target protein, have different functions depending on the Lys residue of the ubiquitin that is linked: Lys-48-linked is invol [...]
   
 0.908
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.