STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A0A0P0XB85Os08g0109900 protein. (251 aa)    
Predicted Functional Partners:
Q6EUK2_ORYSJ
cDNA clone:J023062O22, full insert sequence.
     
 0.981
Q8L460_ORYSJ
cDNA, clone: J100058K04, full insert sequence.
   
 
 0.976
A0A0P0VFG2
Os02g0179900 protein.
    
  0.973
Q10NP6_ORYSJ
Splicing factor 3A subunit 2, putative, expressed.
    
  0.934
A0A0P0V1B4
Os01g0263600 protein.
    
 
 0.931
Q0IWN2_ORYSJ
Os10g0498600 protein.
    
 
 0.931
Q7XZG6_ORYSJ
Pre-mRNA branch site p14, putative, expressed.
    
 0.839
A0A0N7KQF0
Os09g0249600 protein.
    
 
 0.832
Q10DW3_ORYSJ
Splicing factor 3A subunit 3, putative, expressed.
   
 0.820
A0A0P0VEK6
Os02g0142300 protein.
   
 0.807
Your Current Organism:
Oryza sativa Japonica
NCBI taxonomy Id: 39947
Other names: Japanese rice, Japonica rice, O. sativa Japonica Group, Oryza sativa (japonica cultivar-group), Oryza sativa Japonica Group, Oryza sativa subsp. japonica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.